native: remove non required NATIVEINCLUDES

Some modules used a 'NATIVEINCLUDES' with different include path and no other
included directories.
It was defining basic 'include' in a different order and not using other things
defined in INCLUDES.
After doing some checks with the given include path and possible conflicting
files, there should be no conflict when using the default one.

* No common headers between all the NATIVEINCLUDES directories
* No common headers files between board/native/include, cpu/native/include and
  other files in the repository (except other boards/cpus of course).