Fixes issue with JVM failing when started with a debugger
with the following message:

  NPT ERROR: Cannot find nptInitialize

Missing openjdk files in usr.manifest were a fertile source
of issues. This patch aims at making them less likely and
adding all files   except blacklisted files to the image.

This patch skips two files from JRE which are broken links
and inclusion of which would cause manifest upload failure:
 - jre/lib/audio/default.sf2
 - jre/lib/security/cacerts

These should be fixed incrementally.

Reported-by: Oded Gabbay <oded.gabbay@gmail.com>
Signed-off-by: Tomasz Grabiec <tgrabiec@cloudius-systems.com>
Signed-off-by: Pekka Enberg <penberg@cloudius-systems.com>